CellScope: cs

The main process of CellScope includes: Data normalization, First Manifold Fitting, Second step of Manifold Fitting and Hierarchical clustering based on similarity graph.

CellScope.cs.Normalization

Normalize the raw scRNA data.

CellScope.cs.findCenters

Adaptive selection of cell types’ centers

CellScope.cs.Manifold_Fitting_1

Perform manifold fitting to identify Signal Space.

CellScope.cs.Manifold_Fitting_2

Perform second manifold fitting.

CellScope.cs.GraphCluster

Perform graph-based clustering on the selected features.

CellScope.cs.Visualization

Visualize the feature data using specified visualization method