API

Import CellScope as:

import CellScope

• CellScope: cs
  • CellScope.cs.Normalization
  • CellScope.cs.findCenters
  • CellScope.cs.Manifold_Fitting_1
  • CellScope.cs.Manifold_Fitting_2
  • CellScope.cs.GraphCluster
  • CellScope.cs.Visualization
• ClusteringMetrics: cm
  • CellScope.cm.process_labels
  • CellScope.cm.best_map
  • CellScope.cm.calculate_metrics
• FindMarker: fm
  • CellScope.fm.FindMarker
  • CellScope.fm._diff_pct
  • CellScope.fm._diff_mean
  • CellScope.fm._fold_change
  • CellScope.fm._wilcoxon_parallel
  • CellScope.fm._t_test_parallel
• GeneAnalysis: ga
  • CellScope.ga.Gene_Analysis
  • CellScope.ga.plot_sankey
• GeneExpressionVisualizer: gev
  • CellScope.gev.scatter_gene_expression
  • CellScope.gev.plot_mean_expression_heatmap
  • CellScope.gev.plot_clustered_heatmap
  • CellScope.gev.compare_violin_plot_between_classes
• TreeStructured: ts
  • CellScope.ts.find_map
  • CellScope.ts.generate_tree_structured
  • CellScope.ts.visualize_tree_structured
  • CellScope.ts.tree_structure_visualization_static
  • CellScope.ts.tree_structure_visualization_dynamic
  • CellScope.ts.tree_structure_visualization_step