FindMarker: fm

Identifies and visualizes marker genes between two specific cell clusters.

CellScope.fm.FindMarker

Find the Marker Gene between two clusters.

CellScope.fm._diff_pct

Calculate the difference in the percentage of gene expression between two clusters.

CellScope.fm._diff_mean

Calculate the difference in the mean expression of genes between two clusters.

CellScope.fm._fold_change

Compute the fold change in gene expression between two clusters, adjusting for cases with zero values.

CellScope.fm._wilcoxon_parallel

Perform the Wilcoxon rank-sum test in parallel to identify statistically significant marker genes between two clusters.

CellScope.fm._t_test_parallel

Perform a t-test in parallel to identify statistically significant marker genes between two clusters.