GeneExpressionVisualizer: gev

Visualization of gene expression for different cell clusters using scatter plots, heatmaps, and violin plots.

CellScope.gev.scatter_gene_expression

Create scatter plots of gene expression, with markers colored by expression levels.

CellScope.gev.plot_mean_expression_heatmap

Plot mean expression heatmap for marker genes across cell clusters.

CellScope.gev.plot_clustered_heatmap

Generate a clustered heatmap for marker gene expression across different cell clusters.

CellScope.gev.compare_violin_plot_between_classes

Compare gene expression distributions between two cell clusters using violin plots.