CellScope.ts.tree_structure_visualization_dynamic

CellScope.ts. tree_structure_visualization_dynamic (T, step0, step1, Title_1, Title_all, Y_initial, Y_1, Y_all, index_1, index_all, interval = 800, save_gif = False, **gif_filename**=”tree_animation.gif”, **dpi**=100)

The tree_structure_visualization_dynamic function Dynamically constructs a three-tiered hierarchical visualization system with native support for GIF animation export.

Parameters

• T (np.ndarray):

  Matrix of clustering labels for different levels of clustering.

• step0 (int):

  Final starting level for the tree-structured visualization.

• step1 (int):

  Final ending level for the tree-structured visualization.

• Title_1 (list):

  List of titles for the first-level clusters.

• Title_all (list):

  List of titles for clusters at all levels.

• Y_initial (np.ndarray):

  Initial 2D UMAP embedding of all cells.

• Y_1 (list of np.ndarray):

  List of UMAP embeddings for clusters at the first level.

• Y_all (list of np.ndarray):

  List of UMAP embeddings for clusters at all levels.

• index_1 (list):

  List of indices corresponding to cells in each cluster at the first level.

• index_all (list):

  List of indices corresponding to cells in each cluster at all levels.

• interval (int,optional, default=800)

  Controls the time interval between animation frames (unit: milliseconds).

• save_gif (bool, optional, default=False):

  If True, saves the GIF to the specified path.

• gif_filename (str, optional, default=’’):

  Directory path to save the GIF. Required if save_gif=True.

• dpi (int,optional, default=100)

  Dots per inch (DPI) defines the pixel density, where dpi=100 corresponds to a resolution of 100 pixels along one linear inch.

Return

• This function does not return any values. It directly renders the tree structured visualization in CellScope.